PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00950.1.g00390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 406aa    MW: 44164.2 Da    PI: 4.7767
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00950.1.g00390.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.5e-07445540
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                     C+ +++++   +C+++   lC +C  + H+       Ht++
  Zmw_sc00950.1.g00390.1.am.mkhc  4 LCDFCGKQRSMVYCRSDAASLCLSCDRNVHSAnalsqrHTRT 45
                                    7*****************************667888888876 PP

2zf-B_box26.99.8e-094788540
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                     C++++++++   C +++  lC++C   +H        H+++
  Zmw_sc00950.1.g00390.1.am.mkhc 47 LCDRCSSQPAAVRCLEDNASLCQNCDWGGHDAasgasgHKRQ 88
                                    7*****************************446777788876 PP

3CCT62.21.7e-21350393144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     R+ al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ 
  Zmw_sc00950.1.g00390.1.am.mkhc 350 RDSALSRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 393
                                     899*************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000215.01E-7347No hitNo description
PROSITE profilePS501199.3854390IPR000315B-box-type zinc finger
PfamPF006433.1E-64789IPR000315B-box-type zinc finger
CDDcd000211.20E-64790No hitNo description
SMARTSM003360.0384890IPR000315B-box-type zinc finger
PfamPF062037.6E-17350392IPR010402CCT domain
PROSITE profilePS5101715.428350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAVLCDFCGK QRSMVYCRSD AASLCLSCDR NVHSANALSQ RHTRTLLCDR CSSQPAAVRC  60
LEDNASLCQN CDWGGHDAAS GASGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPD  120
CEDGISMMNI DDSGVSNHCV TMDDSRLLEI ANTTLMSDPP SGANLKPLIG SSSGDETNTL  180
LLATDQPTGP VPVMPKIPDA TVNDKFNDGS IYEDLCVDDA DLTFENYEEL FGTSHIQAEQ  240
LFDDAGIDSY FEMEEMLPAD SNEEHKYMQL ECSNMVSADS AMSNPGAKAD STLCIPVRQV  300
KSSLSHSFSG LTGESSAGDH QDCGVSPTLN MGEPPWRLPG PDGSCGGGSR DSALSRYKEK  360
KKRRKFDKKI RYASRKARAD TRRRVKGRFI KAGEAYDYDP LSPRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953745.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-120COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK3YSX90.0K3YSX9_SETIT; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788